Chapter 3 MarkDuplicates | A practical introduction to GATK 4 on Biowulf (NIH HPC)
Identifying duplicate reads in RNA-Seq data using Picard.MarkDuplicates in GenePattern - YouTube
picard tools HsMetrics not using duplicate reads to calculate coverage
Minimal differences between Picard, SAMTools, and no duplicate removal... | Download Table
Evaluating the necessity of PCR duplicate removal from next-generation sequencing data and a comparison of approaches | BMC Bioinformatics | Full Text
picard/src/main/java/picard/sam/markduplicates/MarkDuplicates.java at master · broadinstitute/picard · GitHub
Evaluating the necessity of PCR duplicate removal from next-generation sequencing data and a comparison of approaches | BMC Bioinformatics | Full Text
Frontiers | UMIc: A Preprocessing Method for UMI Deduplication and Reads Correction
Alignment File Processing | Variant Analysis
Chapter 3 MarkDuplicates | A practical introduction to GATK 4 on Biowulf (NIH HPC)
Picard MarkDuplicates with dovetail reads · Issue #416 · broadinstitute/ picard · GitHub
Minimal differences between Picard, SAMTools, and no duplicate removal... | Download Table
Evaluating the necessity of PCR duplicate removal from next-generation sequencing data and a comparison of approaches | BMC Bioinformatics | Full Text
Marking duplicates
Should we run MarkDuplicates on PCR-Free Libraries made using PCR-Free Kits to take care of Optical Duplicates ? – GATK
Density plot of execution time for both SAMTools and Picard duplicate... | Download Scientific Diagram
Faster NGS Duplicate Marking. Introduction | by Eric Scott | grail-eng | Medium
rnaseq: Output
Chapter 3 MarkDuplicates | A practical introduction to GATK 4 on Biowulf (NIH HPC)
Duplicates on Illumina
Question about deduplication with UMI-tools
Bug] When removing duplicates, MarkDuplicates does not remove unmapped records whose mate is a duplicate · Issue #451 · broadinstitute/picard · GitHub
Linux GATK4: AddReplaceReadGroup, Sorting & MarkDuplicates with Picard (Step 7) - YouTube
Duplicate read removal and insert cover. Duplicate reads removal for a)... | Download Scientific Diagram
